STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX03879.1Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase. (544 aa)    
Predicted Functional Partners:
SDW33832.1
Hypothetical protein.
   
 0.930
SDW03254.1
Nitrogen fixation protein NifU.
   
 
 0.816
SDW10727.1
Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family.
  
 
 0.767
carS
CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase; Catalyzes the formation of CDP-2,3-bis-(O-geranylgeranyl)-sn- glycerol (CDP-archaeol) from 2,3-bis-(O-geranylgeranyl)-sn-glycerol 1- phosphate (DGGGP) and CTP. This reaction is the third ether-bond- formation step in the biosynthesis of archaeal membrane lipids.
  
  
 0.756
SDW42837.1
PAP2 superfamily protein.
  
 
 0.756
SDX03855.1
HEAT repeat-containing protein.
 
     0.747
SDW21661.1
Zn-dependent amino-or carboxypeptidase, M28 family.
    
 0.737
SDW94847.1
Archaetidylinositol phosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
  
 0.737
SDW52383.1
Archaetidylserine synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
    
 0.713
SDW73946.1
NTE family protein.
    
 0.692
Your Current Organism:
Haloarcula vallismortis
NCBI taxonomy Id: 28442
Other names: ATCC 29715, CGMCC 1.2048, DSM 3756, H. vallismortis, Halobacterium vallismortis, IFO 14741, JCM 8877, NBRC 14741, strain J. F. 54
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