SDX13583.1 protein (Haloarcula vallismortis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDX13583.1

hydroxymethylglutaryl-CoA synthase. (478 aa)

Predicted Functional Partners:

SDX13594.1

0.997

SDX39267.1

0.992

SDW49683.1

0.987

SDW98177.1

0.987

SDX39246.1

0.979

SDW11142.1

0.976

SDW13697.1

0.957

SDW82238.1

0.957

SDX13556.1

0.957

SDW98200.1

0.921

Your Current Organism:

Haloarcula vallismortis

NCBI taxonomy Id: 28442
Other names: ATCC 29715, CGMCC 1.2048, DSM 3756, H. vallismortis, Halobacterium vallismortis, IFO 14741, JCM 8877, NBRC 14741, strain J. F. 54

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDW11142.1	SDX13583.1	SAMN05443574_101395	SAMN05443574_11555	3-hydroxy-3-methylglutaryl-coenzyme A reductase; Belongs to the HMG-CoA reductase family.	hydroxymethylglutaryl-CoA synthase.	0.976
SDW11142.1	SDX39267.1	SAMN05443574_101395	SAMN05443574_1434	3-hydroxy-3-methylglutaryl-coenzyme A reductase; Belongs to the HMG-CoA reductase family.	Hypothetical protein.	0.666
SDW13697.1	SDW49683.1	SAMN05443574_101475	SAMN05443574_10416	acetyl-CoA C-acetyltransferase.	acetyl-CoA C-acetyltransferase.	0.865
SDW13697.1	SDW82238.1	SAMN05443574_101475	SAMN05443574_10797	acetyl-CoA C-acetyltransferase.	acetyl-CoA C-acetyltransferase/acetyl-CoA acyltransferase.	0.940
SDW13697.1	SDW98177.1	SAMN05443574_101475	SAMN05443574_11116	acetyl-CoA C-acetyltransferase.	acetyl-CoA C-acetyltransferase/acetyl-CoA acyltransferase.	0.883
SDW13697.1	SDW98200.1	SAMN05443574_101475	SAMN05443574_11117	acetyl-CoA C-acetyltransferase.	Hypothetical protein.	0.811
SDW13697.1	SDX13556.1	SAMN05443574_101475	SAMN05443574_11554	acetyl-CoA C-acetyltransferase.	3-ketoacyl-CoA thiolase.	0.941
SDW13697.1	SDX13583.1	SAMN05443574_101475	SAMN05443574_11555	acetyl-CoA C-acetyltransferase.	hydroxymethylglutaryl-CoA synthase.	0.957
SDW13697.1	SDX39267.1	SAMN05443574_101475	SAMN05443574_1434	acetyl-CoA C-acetyltransferase.	Hypothetical protein.	0.861
SDW49683.1	SDW13697.1	SAMN05443574_10416	SAMN05443574_101475	acetyl-CoA C-acetyltransferase.	acetyl-CoA C-acetyltransferase.	0.865
SDW49683.1	SDW82238.1	SAMN05443574_10416	SAMN05443574_10797	acetyl-CoA C-acetyltransferase.	acetyl-CoA C-acetyltransferase/acetyl-CoA acyltransferase.	0.935
SDW49683.1	SDW98177.1	SAMN05443574_10416	SAMN05443574_11116	acetyl-CoA C-acetyltransferase.	acetyl-CoA C-acetyltransferase/acetyl-CoA acyltransferase.	0.871
SDW49683.1	SDW98200.1	SAMN05443574_10416	SAMN05443574_11117	acetyl-CoA C-acetyltransferase.	Hypothetical protein.	0.859
SDW49683.1	SDX13556.1	SAMN05443574_10416	SAMN05443574_11554	acetyl-CoA C-acetyltransferase.	3-ketoacyl-CoA thiolase.	0.935
SDW49683.1	SDX13583.1	SAMN05443574_10416	SAMN05443574_11555	acetyl-CoA C-acetyltransferase.	hydroxymethylglutaryl-CoA synthase.	0.987
SDW49683.1	SDX13594.1	SAMN05443574_10416	SAMN05443574_11556	acetyl-CoA C-acetyltransferase.	acetyl-CoA C-acetyltransferase.	0.874
SDW49683.1	SDX39246.1	SAMN05443574_10416	SAMN05443574_1433	acetyl-CoA C-acetyltransferase.	acetyl-CoA C-acetyltransferase/acetyl-CoA acyltransferase.	0.873
SDW49683.1	SDX39267.1	SAMN05443574_10416	SAMN05443574_1434	acetyl-CoA C-acetyltransferase.	Hypothetical protein.	0.981
SDW82238.1	SDW13697.1	SAMN05443574_10797	SAMN05443574_101475	acetyl-CoA C-acetyltransferase/acetyl-CoA acyltransferase.	acetyl-CoA C-acetyltransferase.	0.940
SDW82238.1	SDW49683.1	SAMN05443574_10797	SAMN05443574_10416	acetyl-CoA C-acetyltransferase/acetyl-CoA acyltransferase.	acetyl-CoA C-acetyltransferase.	0.935

page 1 of 4

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About