STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000719065_06982Unannotated protein. (462 aa)    
Predicted Functional Partners:
GCA_000719065_06983
Unannotated protein.
 
 0.999
GCA_000719065_06981
Unannotated protein.
 0.998
GCA_000719065_07291
Unannotated protein.
  
 
 0.904
GCA_000719065_00756
Unannotated protein.
 
 0.876
GCA_000719065_02112
Unannotated protein.
  
 0.863
GCA_000719065_03170
Unannotated protein.
  
 0.863
GCA_000719065_03679
Unannotated protein.
    
 0.837
GCA_000719065_00209
Unannotated protein.
    
  0.759
GCA_000719065_06984
Unannotated protein.
       0.727
GCA_000719065_04982
Unannotated protein.
  
 0.716
Your Current Organism:
Herbidospora cretacea
NCBI taxonomy Id: 28444
Other names: ATCC 51904, CCTCC AA 208019 [[Herbidospora osyris]], DSM 44071, DSM 44127 [[Streptosporangium claviforme]], DSM 45214 [[Herbidospora osyris]], H. cretacea, Herbidospora osyris, Herbidospora osyris Li et al. 2009, Herbidospora sp. YIM 65070, IFO 15474, IFO 15623 [[Streptosporangium claviforme]], IPV 2852 [[Streptosporangium claviforme]], JCM 16900 [[Herbidospora osyris]], JCM 8553, JCM 9313 [[Streptosporangium claviforme]], NBRC 15474, NBRC 15623 [[Streptosporangium claviforme]], Streptosporangium claviforme, YIM 65070 [[Herbidospora osyris]], strain D1 [[Streptosporangium claviforme]], strain K-319
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.