STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ODR03438.1Hydrogenase expression protein HypE; Derived by automated computational analysis using gene prediction method: Protein Homology. (351 aa)    
Predicted Functional Partners:
BHQ20_00975
Hypothetical protein; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
ODR00470.1
Cytochrome-c3 hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.995
ODR00468.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.950
ODR03145.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.913
ODR01243.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.882
ODR01241.1
Hydantoin utilization protein C; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.870
ODR01256.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.861
ODR01244.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.860
ODR01242.1
Peptidase M52; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.841
ODR02420.1
Stage II sporulation protein E; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.769
Your Current Organism:
Mycobacterium intermedium
NCBI taxonomy Id: 28445
Other names: ATCC 51848, CCUG 37583, CIP 104542, DSM 44049, JCM 13572
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.