STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ODR00154.1Gamma carbonic anhydrase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (174 aa)    
Predicted Functional Partners:
rbcL
Ribulose-bisphosphate carboxylase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the RuBisCO large chain family.
    
 
 0.858
ODR00567.1
Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
    
 0.852
ODQ96936.1
Carbonic anhydrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.789
ODR01381.1
Carbonate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.768
ODR00503.1
Ribulose 1,5-bisphosphate carboxylase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.761
ODR00134.1
Stilbene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.559
ODR00132.1
Abortive infection protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.533
ODR00133.1
NAD-dependent epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.532
ODR00135.1
Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.520
ODR00155.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.514
Your Current Organism:
Mycobacterium intermedium
NCBI taxonomy Id: 28445
Other names: ATCC 51848, CCUG 37583, CIP 104542, DSM 44049, JCM 13572
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