ODQ99003.1 protein (Mycobacterium intermedium)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ODQ99003.1

Cobalt ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (655 aa)

Predicted Functional Partners:

ODQ99002.1

0.998

ODQ98864.1

0.737

ODQ99005.1

0.708

ODQ98731.1

0.698

ODQ99004.1

0.687

ODR01404.1

0.685

ODR02464.1

0.684

ODR01382.1

0.684

ODR02465.1

0.676

ODR02463.1

0.617

Your Current Organism:

Mycobacterium intermedium

NCBI taxonomy Id: 28445
Other names: ATCC 51848, CCUG 37583, CIP 104542, DSM 44049, JCM 13572

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ODQ98731.1	ODQ99003.1	BHQ20_20735	BHQ20_19285	Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.	Cobalt ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.698
ODQ98864.1	ODQ99002.1	BHQ20_20065	BHQ20_19280	DUF1298 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.691
ODQ98864.1	ODQ99003.1	BHQ20_20065	BHQ20_19285	DUF1298 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalt ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.737
ODQ98864.1	ODQ99005.1	BHQ20_20065	BHQ20_19295	DUF1298 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.424
ODQ99002.1	ODQ98864.1	BHQ20_19280	BHQ20_20065	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DUF1298 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.691
ODQ99002.1	ODQ99003.1	BHQ20_19280	BHQ20_19285	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalt ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
ODQ99002.1	ODQ99004.1	BHQ20_19280	BHQ20_19290	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.686
ODQ99002.1	ODQ99005.1	BHQ20_19280	BHQ20_19295	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.714
ODQ99003.1	ODQ98731.1	BHQ20_19285	BHQ20_20735	Cobalt ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.	0.698
ODQ99003.1	ODQ98864.1	BHQ20_19285	BHQ20_20065	Cobalt ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DUF1298 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.737
ODQ99003.1	ODQ99002.1	BHQ20_19285	BHQ20_19280	Cobalt ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
ODQ99003.1	ODQ99004.1	BHQ20_19285	BHQ20_19290	Cobalt ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.687
ODQ99003.1	ODQ99005.1	BHQ20_19285	BHQ20_19295	Cobalt ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.708
ODQ99003.1	ODR01382.1	BHQ20_19285	BHQ20_09405	Cobalt ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.684
ODQ99003.1	ODR01404.1	BHQ20_19285	BHQ20_09400	Cobalt ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.685
ODQ99003.1	ODR02463.1	BHQ20_19285	BHQ20_05175	Cobalt ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.617
ODQ99003.1	ODR02464.1	BHQ20_19285	BHQ20_05180	Cobalt ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.684
ODQ99003.1	ODR02465.1	BHQ20_19285	BHQ20_05185	Cobalt ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.676
ODQ99004.1	ODQ99002.1	BHQ20_19290	BHQ20_19280	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.686
ODQ99004.1	ODQ99003.1	BHQ20_19290	BHQ20_19285	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalt ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.687