STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF70432.1Type VI secretion system protein. (144 aa)    
Predicted Functional Partners:
SDF70395.1
Type VI secretion system protein ImpB.
 
  
 0.991
SDF70476.1
Type VI secretion system protein ImpH.
 
  
 0.989
SDF70456.1
Type VI secretion system protein ImpG.
 
  
 0.987
SDF70542.1
Type VI secretion system protein ImpK.
 
  
 0.986
SDF70420.1
Type VI secretion system protein ImpC.
 
  
 0.984
SDF70506.1
Type VI secretion system protein VasD.
 
  
 0.984
SDF70517.1
Type VI secretion system protein ImpJ.
 
  
 0.981
SDF70492.1
FHA domain protein.
 
  
 0.979
SDF70617.1
Type VI secretion system protein VasJ.
 
  
 0.972
SDF70634.1
Type VI secretion system protein ImpL.
 
  
 0.942
Your Current Organism:
Halomonas taeanensis
NCBI taxonomy Id: 284577
Other names: DSM 16463, H. taeanensis, Halomonas sp. BH539, Halomonas taeanensis Lee et al. 2005, KCTC 12284, strain BH539
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.