STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF80674.1Type IV pilus assembly protein PilQ. (684 aa)    
Predicted Functional Partners:
SDF80605.1
Type IV pilus assembly protein PilN.
 
 
 0.998
SDF80645.1
Type IV pilus assembly protein PilP.
 
 
 0.998
SDF80575.1
Type IV pilus assembly protein PilM.
 
 
 0.996
SDF80616.1
Type IV pilus assembly protein PilO.
 
 
 0.994
SDG24318.1
LysM domain-containing protein.
 
 
 
 0.979
SDG60059.1
Type IV pilus assembly protein PilC.
 
 
 
 0.953
SDG60040.1
Type IV pilus assembly protein PilB.
 
 
 
 0.947
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
     
 0.890
aroB
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).
  
  
 0.809
SDG30420.1
Pilus retraction ATPase PilT.
 
   
 0.791
Your Current Organism:
Halomonas taeanensis
NCBI taxonomy Id: 284577
Other names: DSM 16463, H. taeanensis, Halomonas sp. BH539, Halomonas taeanensis Lee et al. 2005, KCTC 12284, strain BH539
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.