STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG09361.1Curlin associated repeat-containing protein. (212 aa)    
Predicted Functional Partners:
SDG09494.1
Curli production assembly/transport component CsgG.
 
   
 0.870
SDG09475.1
Curli production assembly/transport component CsgF.
 
   
 0.863
parE
DNA topoisomerase IV subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily.
   
 
 0.859
gyrB
DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
   
 
 0.859
SDF66402.1
Signal transduction histidine kinase.
  
 0.706
SDF70993.1
N-acetylmuramoyl-L-alanine amidase.
   
 
 0.654
SDF93644.1
Membrane-bound lytic murein transglycosylase D.
   
 
 0.639
SDF99870.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
  0.572
SDG09375.1
Hypothetical protein.
       0.570
SDF93976.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
     
 0.549
Your Current Organism:
Halomonas taeanensis
NCBI taxonomy Id: 284577
Other names: DSM 16463, H. taeanensis, Halomonas sp. BH539, Halomonas taeanensis Lee et al. 2005, KCTC 12284, strain BH539
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.