STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG31882.1TIGR02444 family protein. (190 aa)    
Predicted Functional Partners:
SDG31863.1
ATP-binding cassette, subfamily F, member 3.
       0.749
SDG31897.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
       0.729
der
GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
   
    0.673
SDG31921.1
TRAP-type C4-dicarboxylate transport system, small permease component.
       0.631
SDG31937.1
TRAP transporter, DctM subunit.
       0.616
SDG31958.1
Nucleotide-binding universal stress protein, UspA family.
       0.502
SDG45050.1
Hypothetical protein.
 
     0.478
SDF79856.1
Periplasmic chaperone for outer membrane proteins Skp.
  
     0.474
SDG60159.1
H-NS histone family protein.
  
     0.447
SDF95340.1
Uncharacterized membrane protein.
  
     0.438
Your Current Organism:
Halomonas taeanensis
NCBI taxonomy Id: 284577
Other names: DSM 16463, H. taeanensis, Halomonas sp. BH539, Halomonas taeanensis Lee et al. 2005, KCTC 12284, strain BH539
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.