STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOO50764.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (249 aa)    
Predicted Functional Partners:
KOO43449.1
Metabolite permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.957
KOO50765.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.931
KOO48617.1
Cell division protein FtsX; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.901
KOO50400.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.794
KOO47626.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.794
KOO45971.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.774
KOO40365.1
Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.766
KOO37236.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.743
tsaD
O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
 
    0.554
KOO50766.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.548
Your Current Organism:
Bacillus koreensis
NCBI taxonomy Id: 284581
Other names: B. koreensis, Bacillus koreensis Lim et al. 2006, Bacillus sp. BR030, DSM 16467, KCTC 3914, strain BR030
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