STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOO46060.1Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology. (186 aa)    
Predicted Functional Partners:
KOO46059.1
Potassium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.704
KOO46058.1
Potassium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.675
KOO37204.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.520
KOO46057.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.517
hslV
ATP-dependent protease subunit HslV; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.
  
    0.506
whiA
Sporulation regulator WhiA; Involved in cell division and chromosome segregation.
   
    0.487
KOO42813.1
DNA topoisomerase III; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.470
KOO46647.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.469
KOO46420.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.416
KOO46061.1
Transcription initiation factor TFIIIB; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.414
Your Current Organism:
Bacillus koreensis
NCBI taxonomy Id: 284581
Other names: B. koreensis, Bacillus koreensis Lim et al. 2006, Bacillus sp. BR030, DSM 16467, KCTC 3914, strain BR030
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.