STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOO43963.1Stage III sporulation protein AF; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)    
Predicted Functional Partners:
KOO43962.1
Stage III sporulation protein AE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.992
KOO43964.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.988
KOO44124.1
Stage III sporulation protein AD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.985
KOO43961.1
Stage III sporulation protein AC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.973
KOO43960.1
Stage III sporulation protein SpoAB; Necessary for complete engulfment of forespore; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.962
KOO44125.1
Stage III sporulation protein AH; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.953
KOO44123.1
Stage III sporulation protein AA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.884
KOO43955.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.799
KOO46923.1
Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.789
KOO46973.1
Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.760
Your Current Organism:
Bacillus koreensis
NCBI taxonomy Id: 284581
Other names: B. koreensis, Bacillus koreensis Lim et al. 2006, Bacillus sp. BR030, DSM 16467, KCTC 3914, strain BR030
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.