Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| KOO44034.1 | KOO44036.1 | AMD01_15035 | AMD01_15045 | Anti-sigma F factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anti-sigma-factor antagonist family. | Sporulation sigma factor SigF; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.959 |
| KOO44034.1 | KOO44037.1 | AMD01_15035 | AMD01_15050 | Anti-sigma F factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anti-sigma-factor antagonist family. | Stage V sporulation protein AA; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.632 |
| KOO44034.1 | KOO44038.1 | AMD01_15035 | AMD01_15055 | Anti-sigma F factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anti-sigma-factor antagonist family. | Stage V sporulation protein AB; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.680 |
| KOO44034.1 | KOO44039.1 | AMD01_15035 | AMD01_15060 | Anti-sigma F factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anti-sigma-factor antagonist family. | Stage V sporulation protein AC; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.877 |
| KOO44034.1 | KOO44040.1 | AMD01_15035 | AMD01_15065 | Anti-sigma F factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anti-sigma-factor antagonist family. | Stage V sporulation protein AD; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.869 |
| KOO44034.1 | KOO44041.1 | AMD01_15035 | AMD01_15070 | Anti-sigma F factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anti-sigma-factor antagonist family. | Stage V sporulation protein AEB; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.848 |
| KOO44034.1 | KOO44042.1 | AMD01_15035 | AMD01_15075 | Anti-sigma F factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anti-sigma-factor antagonist family. | Stage V sporulation protein AE; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.493 |
| KOO44034.1 | KOO44043.1 | AMD01_15035 | AMD01_15080 | Anti-sigma F factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anti-sigma-factor antagonist family. | Stage V sporulation protein AF; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.798 |
| KOO44034.1 | gpr | AMD01_15035 | AMD01_14045 | Anti-sigma F factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anti-sigma-factor antagonist family. | Peptidase; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family. | 0.640 |
| KOO44034.1 | spoIIAB | AMD01_15035 | AMD01_15040 | Anti-sigma F factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anti-sigma-factor antagonist family. | Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition. | 0.998 |
| KOO44036.1 | KOO44034.1 | AMD01_15045 | AMD01_15035 | Sporulation sigma factor SigF; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Anti-sigma F factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anti-sigma-factor antagonist family. | 0.959 |
| KOO44036.1 | KOO44037.1 | AMD01_15045 | AMD01_15050 | Sporulation sigma factor SigF; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Stage V sporulation protein AA; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.653 |
| KOO44036.1 | KOO44038.1 | AMD01_15045 | AMD01_15055 | Sporulation sigma factor SigF; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Stage V sporulation protein AB; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.684 |
| KOO44036.1 | KOO44039.1 | AMD01_15045 | AMD01_15060 | Sporulation sigma factor SigF; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Stage V sporulation protein AC; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.885 |
| KOO44036.1 | KOO44040.1 | AMD01_15045 | AMD01_15065 | Sporulation sigma factor SigF; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Stage V sporulation protein AD; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.874 |
| KOO44036.1 | KOO44041.1 | AMD01_15045 | AMD01_15070 | Sporulation sigma factor SigF; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Stage V sporulation protein AEB; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.864 |
| KOO44036.1 | KOO44042.1 | AMD01_15045 | AMD01_15075 | Sporulation sigma factor SigF; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Stage V sporulation protein AE; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.504 |
| KOO44036.1 | KOO44043.1 | AMD01_15045 | AMD01_15080 | Sporulation sigma factor SigF; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Stage V sporulation protein AF; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.861 |
| KOO44036.1 | gpr | AMD01_15045 | AMD01_14045 | Sporulation sigma factor SigF; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Peptidase; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family. | 0.731 |
| KOO44036.1 | spoIIAB | AMD01_15045 | AMD01_15040 | Sporulation sigma factor SigF; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition. | 0.994 |
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