STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOO42920.1Squalene-hopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (617 aa)    
Predicted Functional Partners:
KOO46561.1
Fatty acid hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.929
KOO43545.1
SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.891
KOO50264.1
Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.849
KOO41911.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.830
KOO42995.1
NADPH--cytochrome reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; In the N-terminal section; belongs to the cytochrome P450 family.
   
 0.817
KOO50769.1
Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.
    
 0.734
KOO46455.1
Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.
    
 0.734
KOO50476.1
FAD-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.630
KOO45956.1
FAD-linked oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.630
KOO47639.1
NUDIX hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.616
Your Current Organism:
Bacillus koreensis
NCBI taxonomy Id: 284581
Other names: B. koreensis, Bacillus koreensis Lim et al. 2006, Bacillus sp. BR030, DSM 16467, KCTC 3914, strain BR030
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.