Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KOO42925.1MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily. (508 aa)    
Predicted Functional Partners:
KOO43063.1
PadR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.569
KOO46368.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.525
KOO46917.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.468
KOO46249.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.449
Your Current Organism:
Bacillus koreensis
NCBI taxonomy Id: 284581
Other names: B. koreensis, Bacillus koreensis Lim et al. 2006, Bacillus sp. BR030, DSM 16467, KCTC 3914, strain BR030
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