STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOO37216.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S8 family. (1176 aa)    
Predicted Functional Partners:
KOO48177.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.518
KOO46292.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.518
KOO43461.1
Copper amine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.518
KOO42756.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.518
KOO42916.1
Copper amine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.518
KOO43038.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.518
KOO45963.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S8 family.
  
  
 
0.491
secY
Preprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
   0.472
KOO42938.1
Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S8 family.
  
  
 
0.448
KOO40704.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.408
Your Current Organism:
Bacillus koreensis
NCBI taxonomy Id: 284581
Other names: B. koreensis, Bacillus koreensis Lim et al. 2006, Bacillus sp. BR030, DSM 16467, KCTC 3914, strain BR030
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.