YKT6 protein (Eremothecium gossypii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

YKT6

Synaptobrevin homolog YKT6. (200 aa)

Predicted Functional Partners:

AGOS_AFR210C

0.999

AGOS_AFL232W

0.999

AGOS_ACL067C

0.999

SEC22

0.998

AGOS_AFL168W

0.998

AGOS_ABR006W

0.998

AGOS_AGL120W

0.997

AGOS_AER438C

0.997

AGOS_ADL007C

0.997

BOS1

0.996

Your Current Organism:

Eremothecium gossypii

NCBI taxonomy Id: 284811
Other names: Ashbya gossypii ATCC 10895, E. gossypii ATCC 10895, Eremothecium gossypii ATCC 10895

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGOS_ABR006W	AGOS_ACL067C	Q75DS5	Q75CI6	ABR006Wp.	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	0.998
AGOS_ABR006W	AGOS_ADL007C	Q75DS5	Q75AC4	ABR006Wp.	ADL007Cp.	0.649
AGOS_ABR006W	AGOS_AER438C	Q75DS5	Q755T0	ABR006Wp.	AER438Cp.	0.529
AGOS_ABR006W	AGOS_AFL168W	Q75DS5	Q755J1	ABR006Wp.	AFL168Wp.	0.710
AGOS_ABR006W	AGOS_AFL232W	Q75DS5	Q755P5	ABR006Wp.	AFL232Wp; Belongs to the syntaxin family.	0.983
AGOS_ABR006W	AGOS_AFR210C	Q75DS5	Q753W2	ABR006Wp.	AFR210Cp; Belongs to the syntaxin family.	0.999
AGOS_ABR006W	AGOS_AGL120W	Q75DS5	Q750R2	ABR006Wp.	AGL120Wp; Belongs to the STXBP/unc-18/SEC1 family.	0.985
AGOS_ABR006W	BOS1	Q75DS5	Q75CY3	ABR006Wp.	Protein transport protein BOS1; SNARE required for protein transport between the ER and the Golgi complex; Belongs to the BOS1 family.	0.990
AGOS_ABR006W	SEC22	Q75DS5	Q74ZD2	ABR006Wp.	Protein transport protein SEC22; Required for transport from the ER to the Golgi complex. Belongs to the synaptobrevin family.	0.991
AGOS_ABR006W	YKT6	Q75DS5	Q757A4	ABR006Wp.	Synaptobrevin homolog YKT6.	0.998
AGOS_ACL067C	AGOS_ABR006W	Q75CI6	Q75DS5	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	ABR006Wp.	0.998
AGOS_ACL067C	AGOS_ADL007C	Q75CI6	Q75AC4	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	ADL007Cp.	0.999
AGOS_ACL067C	AGOS_AER438C	Q75CI6	Q755T0	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	AER438Cp.	0.784
AGOS_ACL067C	AGOS_AFL168W	Q75CI6	Q755J1	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	AFL168Wp.	0.858
AGOS_ACL067C	AGOS_AFL232W	Q75CI6	Q755P5	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	AFL232Wp; Belongs to the syntaxin family.	0.902
AGOS_ACL067C	AGOS_AFR210C	Q75CI6	Q753W2	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	AFR210Cp; Belongs to the syntaxin family.	0.999
AGOS_ACL067C	AGOS_AGL120W	Q75CI6	Q750R2	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	AGL120Wp; Belongs to the STXBP/unc-18/SEC1 family.	0.991
AGOS_ACL067C	BOS1	Q75CI6	Q75CY3	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	Protein transport protein BOS1; SNARE required for protein transport between the ER and the Golgi complex; Belongs to the BOS1 family.	0.999
AGOS_ACL067C	SEC22	Q75CI6	Q74ZD2	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	Protein transport protein SEC22; Required for transport from the ER to the Golgi complex. Belongs to the synaptobrevin family.	0.996
AGOS_ACL067C	YKT6	Q75CI6	Q757A4	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	Synaptobrevin homolog YKT6.	0.999