STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mhr1Uncharacterized protein C18H10.17c. (175 aa)    
Predicted Functional Partners:
rpo41
DNA-directed RNA polymerase, mitochondrial; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Combines in the mitochondrion with mitochondrial transcription factor mtf1 as a holoenzyme to recognize and initiate transcription at the core mitochondrial promoters.
      
 0.628
rsm18
37S ribosomal protein rsm18, mitochondrial; Belongs to the bacterial ribosomal protein bS18 family.
   
   0.605
mrp20
54S ribosomal protein L23, mitochondrial; Involved in mitochondrial genome encoded proteins translation.
   
   0.571
rsm7
37S ribosomal protein S7, mitochondrial.
   
   0.568
mrpl23
54S ribosomal protein L23, mitochondrial; Belongs to the universal ribosomal protein uL13 family.
   
   0.568
mrpl8
54S ribosomal protein L8, mitochondrial; Belongs to the bacterial ribosomal protein bL17 family.
   
   0.542
mrpl19
54S ribosomal protein L19, mitochondrial; Belongs to the universal ribosomal protein uL11 family.
   
   0.535
snr1
3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has an indirect role in endocytic membrane trafficking. May have a function in protein biosynthesis in mitochondrial small ribosomal subunit (By similarity).
   
   0.533
rsm27
37S ribosomal protein S27, mitochondrial; Involved in mitochondrial genome encoded proteins translation.
   
   0.527
rsm25
37S ribosomal protein S25, mitochondrial.
   
   0.527
Your Current Organism:
Schizosaccharomyces pombe
NCBI taxonomy Id: 284812
Other names: S. pombe 972h-, Schizosaccharomyces pombe 972h-
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