STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rps160240S ribosomal protein S16-B. (140 aa)    
Predicted Functional Partners:
rps3
40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
  
 0.995
rps20
40S ribosomal protein S20; Belongs to the universal ribosomal protein uS10 family.
  
 0.995
rpl1102
60S ribosomal protein L11-B; Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. The small ribosomal subunit (SSU) binds messenger RNAs (mRNAs) and translates the encoded message by selecting cognate aminoacyl-transfer RNA (tRNA) molecules. The large subunit (LSU) contains the ribosomal catalytic site termed the peptidyl transferase center (PTC), which catalyzes the formation of peptide bonds, thereby polymerizing the amino acids delivered by tRNAs into a polypeptide chain. The nascent polypeptides leave the ribosome throu [...]
  
 0.995
rps2
40S ribosomal protein S2.
  
 0.994
rps001
40S ribosomal protein S0-A; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.
  
 0.994
rps29
40S ribosomal protein S29; Belongs to the universal ribosomal protein uS14 family.
  
 0.993
tef3
Elongation factor 3; The main role of EF-3 may be to transduce nucleoside triphosphate energy into mechanical energy for translocation during translation. EF-3 stimulates EF-1-alpha-dependent binding of aminoacyl- tRNA to the ribosome.
   
 
 0.993
rps13
40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.
   
 0.993
rps7
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
   
 0.993
elf1
mRNA export factor elf1; Has a direct role in the mRNA export process. Appears to act within the rae1 mediated mRNA export pathway. Belongs to the ABC transporter superfamily. ABCF family. EF3 subfamily.
   
 
 0.992
Your Current Organism:
Schizosaccharomyces pombe
NCBI taxonomy Id: 284812
Other names: S. pombe 972h-, Schizosaccharomyces pombe 972h-
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