STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sft1Protein transport protein sft1; Vesicle SNARE required for retrograde transport within the Golgi complex. (91 aa)    
Predicted Functional Partners:
gos1
Protein transport protein gos1; Nonessential SNARE involved in retrograde transport within the Golgi complex.
   
 0.998
sed5
Integral membrane protein sed5; Required for vesicular transport between the endoplasmic reticulum and the Golgi complex. Acts as a target organelle soluble NSF attachment protein receptor (t-SNARE) (By similarity); Belongs to the syntaxin family.
   
 0.997
ykt6
Synaptobrevin homolog ykt6.
    
 0.997
bos1
Protein transport protein bos1; SNARE required for targeting and fusion of ER-derived transport vesicles with the Golgi complex.
   
 0.940
sec22
Protein transport protein sec22; Nonessential SNARE involved in targeting and fusion of ER- derived transport vesicles with the Golgi complex as well as Golgi- derived retrograde transport vesicles with the ER; Belongs to the synaptobrevin family.
   
 
 0.918
pep12
Syntaxin pep12; Has a role in vesicle-mediated transport but not with protein transport from Golgi to vesicle; Belongs to the syntaxin family.
   
 
 0.906
sly1
Protein sly1.
   
 
 0.847
uso1
Intracellular protein transport protein uso1; Required for protein transport from the ER to the Golgi complex; Belongs to the VDP/USO1/EDE1 family.
    
 
 0.834
bet1
Protein transport protein bet1; SNARE required for targeting and fusion of ER-derived transport vesicles with the Golgi complex.
     
 0.830
sec17
Probable vesicular-fusion protein sec17 homolog; Required for vesicular transport between the endoplasmic reticulum and the Golgi apparatus; Belongs to the SNAP family.
   
 0.817
Your Current Organism:
Schizosaccharomyces pombe
NCBI taxonomy Id: 284812
Other names: S. pombe 972h-, Schizosaccharomyces pombe 972h-
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.