STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bet5Transport protein particle subunit bet5; May play a role in vesicular transport from endoplasmic reticulum to Golgi. (155 aa)    
Predicted Functional Partners:
tca17
Uncharacterized protein C15A10.12c.
   
 0.999
trs120
Transport protein particle subunit trs120; Component of the TRAPP II complex. TRAPP II seems to play a role in intra-Golgi transport (By similarity).
   
 0.999
trs23
Transport protein particle subunit trs23; TRAPP plays a key role in the late stages of endoplasmic reticulum to Golgi traffic.
   
 0.999
trs33
Uncharacterized protein C13G6.05c; Belongs to the TRAPP small subunits family. BET3 subfamily.
   
 0.999
bet3
Transport protein particle subunit bet3.
   
 0.999
trs31
Transport protein particle subunit trs31; TRAPP plays a key role in the late stages of endoplasmic reticulum to Golgi traffic.
   
 0.999
trs20
Transport protein particle 20 kDa subunit; Component of the TRAPP I and TRAPP II complexes. TRAPP I plays a key role in the late stages of endoplasmic reticulum to Golgi traffic. TRAPP II seems to play a role in intra-Golgi transport (By similarity); Belongs to the TRAPP small subunits family. Sedlin subfamily.
   
 0.999
trs130
Uncharacterized protein CC285.14; Belongs to the TMEM1 family.
    
 0.998
ypt1
GTP-binding protein ypt1; The small GTPases Rab are key regulators of intracellular membrane trafficking, from the formation of transport vesicles to their fusion with membranes. Rabs cycle between an inactive GDP-bound form and an active GTP-bound form that is able to recruit to membranes different set of downstream effectors directly responsible for vesicle formation, movement, tethering and fusion. Ypt1 regulates the trafficking of secretory vesicles from the endoplasmic reticulum (ER) to the Golgi. Plays a role in the initial events of the autophagic vacuole development which take [...]
    
 0.991
trs8502
Transport protein particle subunit trs85-2; Component of the TRAPP I and TRAPP II complexes. TRAPP I plays a key role in the late stages of endoplasmic reticulum to Golgi traffic. TRAPP II seems to play a role in intra-Golgi transport. Has a role late in meiosis following DNA replication (By similarity).
   
 0.975
Your Current Organism:
Schizosaccharomyces pombe
NCBI taxonomy Id: 284812
Other names: S. pombe 972h-, Schizosaccharomyces pombe 972h-
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.