STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RRP3ATP-dependent rRNA helicase RRP3; ATP-dependent rRNA helicase required for pre-ribosomal RNA processing. Involved in the maturation of the 35S-pre-rRNA and to its cleavage to mature 18S rRNA. (400 aa)    
Predicted Functional Partners:
Q8SVG2_ENCCU
Similarity to HYPOTHETICAL WD-REPEAT PROTEIN YER2_yeast.
   
 0.994
Q8SVW2_ENCCU
KH_8 domain-containing protein.
   
 0.993
Q8SRI9_ENCCU
ATP-DEPENDENT RNA HELICASE (DEAD BOX FAMILY).
  
0.992
Q8SVC5_ENCCU
Uncharacterized protein.
  
 0.992
Q8SSI4_ENCCU
U3 snoRNA-ASSOCIATED RNP (18S rRNA PRODUCTION).
   
 0.987
Q8SVL0_ENCCU
PINc domain-containing protein.
   
 0.986
Q8SWN7_ENCCU
Uncharacterized protein.
   
 0.986
Q8SRG6_ENCCU
40S RIBOSOMAL PROTEIN S2; Belongs to the universal ribosomal protein uS5 family.
  
 0.985
RPS9
40S ribosomal protein S9; Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly; Belongs to the universal ribosomal protein uS4 family.
  
 0.985
RPS6
40S ribosomal protein S6.
   
 0.985
Your Current Organism:
Encephalitozoon cuniculi
NCBI taxonomy Id: 284813
Other names: E. cuniculi GB-M1, Encephalitozoon cuniculi GB-M1
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