STRINGSTRING
Phatr34800 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr34800" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr34800Predicted protein (387 aa)    
Predicted Functional Partners:
Phatr49601
Alanine glyoxylate aminotransferase (465 aa)
   
 
  0.689
TPI/GapC3
Triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase (614 aa)
   
 
  0.620
Phatrdraft598
Predicted protein (313 aa)
   
  0.583
Phatrdraft1619
Predicted protein (515 aa)
   
  0.583
Phatr51714
Reductase with NAD or NADP as acceptor (341 aa)
   
  0.583
Phatr51608
2,5-diketo-D-gluconic acid reductase A-like protein (230 aa)
   
  0.583
Phatr50252
Predicted protein (479 aa)
   
  0.583
Phatr48862
Predicted protein (331 aa)
   
  0.583
Phatr48100
Predicted protein (404 aa)
   
  0.583
Phatr43684
Predicted protein (330 aa)
   
  0.583
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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