STRINGSTRING
Phatr46461 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr46461" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr46461Predicted protein (426 aa)    
Predicted Functional Partners:
Phatr22113
Bifunctional aspartokinase (870 aa)
   
  0.999
Phatr49056
Predicted protein (504 aa)
 
 
  0.999
Phatr35594
Predicted protein (512 aa)
 
 
  0.989
Phatr48694
Homoserine dehydrogenase (437 aa)
 
  0.950
Phatr26813
Homoserine dehydrogenase (456 aa)
 
  0.949
Phatr49903
Predicted protein (654 aa)
   
 
  0.907
Phatr15917
Cystathionine gamma-lyase (392 aa)
   
 
  0.907
Phatr52316
Aspartokinase (468 aa)
   
  0.876
Phatr43697
Branched-chain-amino-acid aminotransferase (356 aa)
   
 
  0.843
Phatr32849
Predicted protein (299 aa)
   
 
  0.843
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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