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Phatr49800 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr49800" - Histone deacetylase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr49800Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily (426 aa)    
Predicted Functional Partners:
NURF-55
Chromatin assembly factor subunit c (466 aa)
     
 
  0.899
Phatr12028
Predicted protein (618 aa)
     
 
  0.860
Phatr8827
Predicted protein (219 aa)
     
 
  0.826
Phatr33896
Predicted protein (866 aa)
     
 
  0.808
Phatr16875
Predicted protein (164 aa)
   
 
  0.785
Phatr43759
Predicted protein (462 aa)
     
 
  0.777
Phatr45764
Predicted protein (1603 aa)
     
 
  0.774
Phatr45703
Predicted protein (2426 aa)
     
 
  0.774
H2A-m1
Histone H2A (138 aa)
     
 
  0.771
Phatr49808
Predicted protein (1718 aa)
     
 
  0.752
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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