STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFJ88415.1Transcriptional regulator, LysR family. (312 aa)    
Predicted Functional Partners:
SFK35452.1
DNA-binding transcriptional regulator, LysR family.
  
     0.774
SFK94897.1
DNA-binding transcriptional regulator, LysR family.
  
     0.772
SFL04374.1
LysR family transcriptional regulator, glycine cleavage system transcriptional activator.
  
     0.771
SFL04426.1
DNA-binding transcriptional regulator, LysR family.
  
     0.771
SFK07772.1
DNA-binding transcriptional regulator, LysR family.
  
     0.769
SFK95660.1
DNA-binding transcriptional regulator, LysR family.
  
     0.767
SFL18824.1
DNA-binding transcriptional regulator, LysR family.
  
     0.767
SFK34926.1
LysR family transcriptional regulator, glycine cleavage system transcriptional activator.
  
     0.761
SFK52370.1
DNA-binding transcriptional regulator, LysR family.
  
     0.761
SFK14874.1
DNA-binding transcriptional regulator, LysR family.
  
     0.760
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.