STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFJ90157.1Protein tyrosine phosphatase. (161 aa)    
Predicted Functional Partners:
SFK14491.1
Protein-tyrosine phosphatase.
     
 0.869
SFJ98922.1
Thioredoxin.
  
 
 0.785
SFJ88043.1
Thioredoxin.
  
 
 0.785
SFK47604.1
Acyl transferase domain-containing protein.
  
 0.785
SFJ99244.1
Deoxyribodipyrimidine photo-lyase.
 
  
   0.768
SFK20796.1
Membrane protease subunit HflC.
  
    0.718
SFK70913.1
Undecaprenyl-phosphate glucose phosphotransferase.
  
 
 0.714
SFK93844.1
Arsenite transporter, ACR3 family.
  
  
 0.693
SFJ96277.1
Probable rRNA maturation factor.
  
   0.677
SFK70971.1
Uncharacterized protein involved in exopolysaccharide biosynthesis.
  
 
 0.661
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.