STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFJ92168.1tRNA (guanine37-N1)-methyltransferase. (234 aa)    
Predicted Functional Partners:
SFJ92143.1
LSU ribosomal protein L19P.
 
  
 0.991
SFJ92216.1
SSU ribosomal protein S16P.
 
  
 0.982
SFJ92192.1
16S rRNA processing protein RimM.
  
  
 0.969
SFK84716.1
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase.
  
   0.967
SFL09894.1
DNA-directed RNA polymerase subunit alpha.
 
  
 0.937
SFJ96400.1
NusA antitermination factor.
 
  
 0.935
SFK71255.1
LSU ribosomal protein L13P.
 
  
 0.932
SFK73572.1
SSU ribosomal protein S2P.
 
  
 0.932
SFL10581.1
DNA-directed RNA polymerase subunit beta.
 
  
 0.929
SFJ96432.1
Translation initiation factor IF-2.
 
  
 0.924
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.