STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFJ93098.1SH3 domain-containing protein. (115 aa)    
Predicted Functional Partners:
SFK64278.1
GMP synthase (glutamine-hydrolysing).
    
 0.856
SFJ93078.1
Phosphoribosylanthranilate isomerase.
   
   0.632
SFK72475.1
N-acetylmuramoyl-L-alanine amidase.
    
 0.601
SFK64835.1
Nucleoid-associated protein YgaU, contains BON and LysM domains.
    
 0.597
SFK36914.1
Opacity protein.
   
 
 0.567
SFL09937.1
Adenylate kinase.
   
  0.566
SFL13115.1
Adenylate kinase.
   
  0.566
SFJ93056.1
Tryptophan synthase beta chain.
       0.541
SFJ99136.1
Cytidylate kinase.
  
 
  0.540
SFK87282.1
Thymidylate kinase.
    
  0.534
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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