STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFJ93621.1Uncharacterized membrane protein YcfT. (348 aa)    
Predicted Functional Partners:
SFK70991.1
Acetyltransferase involved in cellulose biosynthesis, CelD/BcsL family.
  
     0.764
SFK80777.1
PilZ domain-containing protein.
  
     0.753
SFK78730.1
Hypothetical protein.
  
     0.751
SFK78376.1
Flagellin N-terminal helical region.
  
     0.746
SFK78397.1
Flagellar protein FlaF.
  
     0.746
SFK70888.1
O-antigen ligase like membrane protein.
  
     0.728
SFK57675.1
Hypothetical protein.
  
     0.717
SFK71015.1
Polysaccharide deacetylase.
  
     0.696
SFK90707.1
Uncharacterized membrane protein.
  
     0.695
SFK90727.1
Hypothetical protein.
  
     0.695
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.