STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFJ86636.1acyl-CoA thioesterase-1. (226 aa)    
Predicted Functional Partners:
SFJ86687.1
Putative ABC transport system permease protein.
 
     0.928
SFJ86660.1
Putative ABC transport system ATP-binding protein.
 
     0.902
SFK90894.1
Phage conserved hypothetical protein, phiE125 gp8 family.
  
 0.743
SFL01347.1
Glycosyl hydrolases family 28.
  
 0.743
SFJ86596.1
2'-5' RNA ligase.
      0.724
SFL19419.1
Autotransporter-associated beta strand repeat-containing protein/T5SS/PEP-CTERM-associated repeat-containing protein.
  
 0.681
SFL26867.1
Autotransporter-associated beta strand repeat-containing protein/T5SS/PEP-CTERM-associated repeat-containing protein.
  
 0.681
SFL27217.1
Autotransporter-associated beta strand repeat-containing protein.
  
 0.681
SFK16906.1
Haemagluttinin repeat-containing protein.
   
 0.613
SFK46220.1
FG-GAP repeat-containing protein.
   
 0.613
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.