STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFJ86801.1Multidrug resistance efflux pump. (410 aa)    
Predicted Functional Partners:
SFK72229.1
Outer membrane protein.
  
 0.846
SFK25490.1
Efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
  
 0.838
SFK32278.1
Efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
  
 0.838
SFK74353.1
Outer membrane protein, adhesin transport system.
  
 0.838
SFL22245.1
Outer membrane protein, adhesin transport system.
  
 0.838
SFJ86820.1
Hypothetical protein.
       0.808
SFK26713.1
Putative ABC transport system permease protein.
  
  
 0.715
SFK02292.1
Membrane fusion protein, multidrug efflux system.
 
  
  0.709
SFK02313.1
Hydrophobic/amphiphilic exporter-1, HAE1 family.
 
  
 0.693
SFK79846.1
RND family efflux transporter, MFP subunit.
 
  
  0.687
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.