STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFJ96311.1Apolipoprotein N-acyltransferase. (536 aa)    
Predicted Functional Partners:
SFJ96291.1
CBS domain-containing protein.
   
 0.829
SFJ96262.1
Phosphate starvation-inducible protein PhoH.
 
   
 0.801
SFK73754.1
Beta-barrel assembly machine subunit BamA.
 
   
 0.766
SFJ96277.1
Probable rRNA maturation factor.
     
 0.764
SFK73486.1
Lipoprotein-releasing system permease protein.
 
   
 0.712
SFK57144.1
Cell division and transport-associated protein TolQ (TC 2.C.1.2.1).
  
   
 0.695
SFK21415.1
Beta-barrel assembly machine subunit BamD.
  
   
 0.690
SFK34825.1
Protein translocase subunit yidC.
  
   
 0.679
SFK57219.1
Peptidoglycan-associated lipoprotein.
  
   
 0.643
SFJ99116.1
SSU ribosomal protein S1P.
 
     0.625
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.