STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK01101.1Uncharacterized conserved protein PhnB, glyoxalase superfamily. (129 aa)    
Predicted Functional Partners:
SFJ93384.1
Tryptophan synthase, alpha chain.
    
  0.867
SFL17873.1
Lactoylglutathione lyase.
  
 
 0.801
SFK01084.1
AraC-type DNA-binding protein.
 
    0.765
SFK52662.1
Lactoylglutathione lyase.
    
  0.758
SFK85780.1
Lactoylglutathione lyase.
    
  0.758
SFK70185.1
Threonine dehydratase.
    
  0.689
SFK33514.1
Rhodanese-related sulfurtransferase.
 
 
  0.579
SFK33875.1
Carbon starvation protein CstA.
   
    0.566
SFL12091.1
Alcohol dehydrogenase (NADP+).
  
 
  0.548
SFK45739.1
Primary-amine oxidase.
  
  
  0.544
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.