STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK11400.1DNA polymerase. (335 aa)    
Predicted Functional Partners:
SFK70109.1
uracil-DNA glycosylase, family 4.
  
  
 0.926
SFK85766.1
Single-strand binding protein.
   
   0.851
SFJ99887.1
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB.
   
   0.728
SFK35489.1
Peptide deformylase.
   
 0.710
SFJ96182.1
tRNA threonylcarbamoyladenosine biosynthesis protein TsaB.
  
    0.662
SFK65962.1
Flagellar basal-body rod protein FlgC.
    
   0.644
SFK78855.1
Flagellar basal-body rod protein FlgC.
    
   0.644
SFJ96593.1
Phosphoglycerate mutase.
   
    0.609
SFJ96645.1
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase.
   
    0.609
SFK63798.1
Guanylate kinase.
      0.565
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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