STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK12194.14-hydroxy-3-methylbut-2-enyl diphosphate reductase. (331 aa)    
Predicted Functional Partners:
SFJ87750.1
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase.
 
 
 0.988
SFJ99116.1
SSU ribosomal protein S1P.
 
 
 0.965
SFJ89863.1
Farnesyl diphosphate synthase.
 
 0.932
SFK84716.1
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase.
 
   
 0.928
SFK73698.1
1-deoxy-D-xylulose 5-phosphate reductoisomerase.
 
   
 0.918
SFK10596.1
1-deoxy-D-xylulose-5-phosphate synthase.
  
 0.911
SFJ99136.1
Cytidylate kinase.
      0.910
SFK80277.1
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase.
 
   
 0.910
SFK24490.1
peptidyl-tRNA hydrolase, PTH1 family.
    
 
 0.869
SFK12235.1
Ribonuclease HI.
       0.855
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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