STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK20583.1Acetyltransferase (GNAT) family protein. (140 aa)    
Predicted Functional Partners:
SFJ89134.1
Argininosuccinate synthase.
  
 
 0.550
SFK20603.1
Alkyl sulfatase BDS1, metallo-beta-lactamase superfamily.
       0.496
SFK20562.1
Acetyltransferase (GNAT) family protein.
 
    
0.480
SFK34883.1
N-acetylglutamate kinase.
  
 
 0.450
SFK20543.1
MFS transporter, SET family, sugar efflux transporter.
       0.433
SFK46444.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.423
SFK43135.1
Transcriptional regulator, XRE family with cupin sensor.
    
  0.402
SFL21121.1
Transcriptional regulator, XRE family with cupin sensor.
    
  0.402
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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