STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK24241.1tRNA-binding protein. (118 aa)    
Predicted Functional Partners:
SFK37332.1
phenylalanyl-tRNA synthetase, alpha subunit.
  
 0.997
SFK22277.1
Methionine synthase (B12-dependent).
     
 0.795
SFJ92381.1
leucyl-tRNA synthetase.
  
  
 0.677
SFK87249.1
methionyl-tRNA synthetase.
  
 
 0.666
SFK90125.1
Threonine/homoserine efflux transporter RhtA.
  
   0.660
SFK09611.1
Dihydroorotate oxidase A.
  
  
 0.657
SFK54951.1
Glutamate synthase (NADH) large subunit.
     
 0.612
SFK37315.1
phenylalanyl-tRNA synthetase beta subunit.
  
 
 0.592
SFK24264.1
Hypothetical protein.
       0.568
SFJ93778.1
DNA polymerase I.
  
  
 0.552
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.