STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK24275.1Pyrroline-5-carboxylate reductase. (273 aa)    
Predicted Functional Partners:
SFK31718.1
L-proline dehydrogenase.
   
 0.907
SFK00002.1
Glutamate 5-kinase.
 
 0.872
SFJ99984.1
Glutamate-5-semialdehyde dehydrogenase.
 
 
 0.866
SFK24300.1
Hypothetical protein.
       0.812
SFK58203.1
4-hydroxyproline epimerase.
    
 0.783
SFJ92514.1
tRNA uridine 5-carboxymethylaminomethyl modification enzyme.
    
  0.757
SFL10036.1
LSU ribosomal protein L6P.
    
  0.754
SFK44669.1
Cytochrome P450.
  
  
  0.710
SFK47393.1
Cytochrome P450.
  
  
  0.709
SFK61239.1
Cytochrome P450.
  
  
  0.709
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.