STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK20796.1Membrane protease subunit HflC. (295 aa)    
Predicted Functional Partners:
SFK20814.1
Membrane protease subunit HflK.
 
0.999
SFK57315.1
Membrane protease FtsH catalytic subunit.
  
 0.989
SFK47604.1
Acyl transferase domain-containing protein.
  
 0.816
SFK20774.1
Hypothetical protein.
     
 0.806
SFJ96040.1
Molecular chaperone DnaK.
   
 0.799
SFK65098.1
NADPH-glutathione reductase.
  
 0.788
SFJ98504.1
ATP synthase F1 subcomplex alpha subunit.
   
 0.786
SFK80822.1
Membrane associated serine protease, rhomboid family.
   
 0.778
SFJ98528.1
ATP synthase F1 subcomplex beta subunit.
   
 0.769
SFK46783.1
Hypothetical chaperone protein.
   
 0.760
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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