STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK26064.1Short-chain dehydrogenase. (254 aa)    
Predicted Functional Partners:
SFK47604.1
Acyl transferase domain-containing protein.
  
 0.924
SFK54951.1
Glutamate synthase (NADH) large subunit.
    
  0.807
SFK25831.1
SnoaL-like domain-containing protein.
 
   
 0.729
SFK25806.1
Hypothetical protein.
 
  
 0.701
SFK56254.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
 
  0.698
SFK25791.1
Predicted NAD/FAD-binding protein.
 
   
 0.689
SFK93675.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
 
  0.679
SFL06439.1
Short chain dehydrogenase.
  
 
  0.677
SFK46551.1
3-oxoacyl-[acyl-carrier protein] reductase.
  
 
  0.661
SFK35050.1
Phosphate butyryltransferase.
  
 
 0.654
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.