STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK34944.12,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase. (283 aa)    
Predicted Functional Partners:
SFJ96576.1
Dihydrodipicolinate reductase.
 
 
 0.977
SFJ91068.1
Aspartate/methionine/tyrosine aminotransferase.
   
 0.918
SFK09998.1
Acetylornithine aminotransferase apoenzyme.
    
 0.902
SFK64278.1
GMP synthase (glutamine-hydrolysing).
   
  
 0.891
SFK89899.1
Aspartate/methionine/tyrosine aminotransferase.
    
 0.782
SFK37315.1
phenylalanyl-tRNA synthetase beta subunit.
   
  
 0.740
SFK23473.1
Aspartate aminotransferase.
 
  
 0.736
SFK71393.1
Alanine-synthesizing transaminase.
    
 0.712
SFK54270.1
Aspartate/methionine/tyrosine aminotransferase.
    
 0.699
SFK85583.1
seryl-tRNA synthetase.
  
  
 0.681
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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