STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK35420.1Predicted amidohydrolase. (332 aa)    
Predicted Functional Partners:
SFK54951.1
Glutamate synthase (NADH) large subunit.
    
 0.872
SFK35401.1
Nitrilase.
 
  
 
0.849
SFK35437.1
Hypothetical protein.
 
     0.837
SFK54386.1
Leucine dehydrogenase.
   
 
 0.833
SFK54927.1
Glutamate synthase (NADH) small subunit.
  
 0.792
SFJ94853.1
Aldehyde dehydrogenase (NAD+).
   
  0.776
SFK11341.1
L-aspartate oxidase.
    
 0.776
SFK62529.1
Amidase.
    
 0.771
SFK57451.1
Adenylosuccinate synthetase.
    
  0.768
SFK79635.1
Phosphoribosylformylglycinamidine synthase subunit I.
    
 0.768
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
Server load: low (18%) [HD]