STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK37808.1Site-specific recombinase XerD. (348 aa)    
Predicted Functional Partners:
SFK37728.1
Phage prohead protease, HK97 family.
 
     0.844
SFK16570.1
Site-specific recombinase XerD.
  
 
  0.820
SFK37769.1
Predicted phage recombinase, RecA/RadA family.
 
     0.817
SFK37709.1
Phage portal protein, lambda family.
 
     0.814
SFK37788.1
Hypothetical protein.
       0.773
SFK07940.1
Site-specific recombinase XerD.
  
 
 
0.739
SFL04011.1
Site-specific recombinase XerD.
  
 
 
0.739
SFK37690.1
Hypothetical protein.
       0.726
SFK37749.1
Hypothetical protein.
       0.726
SFK99942.1
Site-specific recombinase XerD.
  
 
 
0.725
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.