STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK31620.1Arginine deiminase. (408 aa)    
Predicted Functional Partners:
SFK31634.1
Ornithine carbamoyltransferase.
 
 0.999
SFK31652.1
Carbamate kinase.
 
  
 0.992
SFK09979.1
Ornithine carbamoyltransferase.
 
 0.986
SFK31590.1
Uncharacterized membrane protein YfcC, ion transporter superfamily.
 
   
 0.889
SFJ89134.1
Argininosuccinate synthase.
     
 0.887
SFK00863.1
Arginase.
    
 0.876
SFK87404.1
Arginine decarboxylase.
    
  0.868
SFK74496.1
NADP-dependent alcohol dehydrogenase.
   
    0.805
SFK08240.1
Putative NADH-flavin reductase.
   
    0.804
SFJ91596.1
Argininosuccinate lyase.
     
 0.800
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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