STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK30933.1Cupin domain-containing protein. (135 aa)    
Predicted Functional Partners:
SFJ99965.1
Nicotinate-nucleotide adenylyltransferase.
   
    0.787
SFK95499.1
TRAP transporter, DctM subunit.
   
    0.611
SFK63213.1
Phosphoribosylglycinamide formyltransferase-1.
   
    0.608
SFK01852.1
cobalt-precorrin-5B (C1)-methyltransferase.
   
    0.605
SFK01296.1
Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) family.
 
  
  0.594
SFL04181.1
3-oxoadipate enol-lactonase / 4-carboxymuconolactone decarboxylase.
  
 
 0.503
SFK15934.1
anti-ECFsigma factor, ChrR.
  
 
  0.486
SFK41464.1
Phytanoyl-CoA dioxygenase (PhyH).
 
  
  0.483
SFJ95582.1
Succinylglutamate desuccinylase.
  
     0.446
SFK13214.1
AraC-type DNA-binding protein.
  
  0.424
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.