STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK45224.13-(3-hydroxy-phenyl)propionate hydroxylase. (540 aa)    
Predicted Functional Partners:
SFK45206.1
Protein of unknown function.
 
    0.957
SFK45237.1
Glyoxylase, beta-lactamase superfamily II.
    0.946
SFK45184.1
Catechol 2,3-dioxygenase.
 
  
  0.873
SFK47604.1
Acyl transferase domain-containing protein.
  
 0.814
SFK47642.1
Homogentisate 1,2-dioxygenase.
 
  
 0.732
SFJ85996.1
3-demethylubiquinone-9 3-methyltransferase.
   
 0.715
SFK13251.1
Methyltransferase domain-containing protein.
   
 0.715
SFK30906.1
Protein of unknown function.
   
 0.715
SFK53931.1
Ubiquinone/menaquinone biosynthesis C-methylase UbiE.
   
 0.715
SFK63623.1
Thiopurine S-methyltransferase (TPMT).
   
 0.715
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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