STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK43135.1Transcriptional regulator, XRE family with cupin sensor. (185 aa)    
Predicted Functional Partners:
SFK43157.1
Dimethylglycine dehydrogenase.
 
 
 0.832
SFL21121.1
Transcriptional regulator, XRE family with cupin sensor.
  
 
 0.745
SFK37951.1
4-methylaminobutanoate oxidase (formaldehyde-forming).
 
 
 0.653
SFK15772.1
GntR family transcriptional regulator.
  
  
 0.640
SFK38088.1
Transcriptional regulator, GntR family.
  
  
 0.640
SFK53818.1
GntR family transcriptional regulator, phosphonate transport system regulatory protein.
  
  
 0.640
SFK65029.1
NAD+ synthase.
  
 
 0.616
SFL04181.1
3-oxoadipate enol-lactonase / 4-carboxymuconolactone decarboxylase.
    
 0.592
SFK66501.1
Fumarase, class I, homodimeric.
    
  0.586
SFK13214.1
AraC-type DNA-binding protein.
  
 0.541
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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