STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK43323.1Kynurenine formamidase. (263 aa)    
Predicted Functional Partners:
SFK34490.1
Kynureninase.
  
 
 0.873
SFL21089.1
Kynureninase.
 
 
 0.873
SFK61874.1
Indolepyruvate ferredoxin oxidoreductase beta subunit.
 
  
  0.822
SFK34473.1
Tryptophan 2,3-dioxygenase.
  
 
 0.820
SFK61894.1
Indolepyruvate ferredoxin oxidoreductase alpha subunit.
 
     0.799
SFK62118.1
Short-chain dehydrogenase.
 
     0.778
SFK62059.1
3-phenylpropionate/cinnamic acid dioxygenase, small subunit.
 
     0.762
SFK66501.1
Fumarase, class I, homodimeric.
    
  0.761
SFK62041.1
Phenylpropionate dioxygenase, large terminal subunit.
 
     0.754
SFK85177.1
Uncharacterized conserved protein, DUF849 family.
  
    0.750
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.